Data sets in FLJ human cDNA database

(FLJ human cDNA database ver. 2.0)

Human cDNA sequences used for annotation analysis of Pfam, SOSUI, homology search etc.

1) Human cDNA sequences of cDNAs by oligo-capping method used in this DB

  • Full-length cDNA sequence data

    • a) FLJ full-length cDNA sequence data by FLJ-PJ : 30,063

    b) FLJ full-length cDNA sequence data by human cDNA sequencing project focused on splicing variants of mRNAs in NEDO FAP-PJ

    i) FLJ cDNA full ORF sequencing project I by SV-PJ : 8,953

    (ORF regions and 5’-noncoding regions)

    2) Others human cDNA sequences from public DB in this DB

  • Full-length sequenced cDNAs

    • a) KIAA (Kazusa DNA Research Institute) : 2,459 (KIAA: 2039, FLJ-PJ : 420)

    b) MGC (Mammalian Gene Collection) : 23,988

    c) DKFZ (Deutsches Krebsforschungszentrum) : 8,212

    d) Other institutions : 14,991

  • RefSeq, human, ver. 2005.10.17

    • a) NM : 24,210

    b) NR : 251

    Human cDNA and genome sequences used for genome mapping

    1) Human cDNA sequences of cDNAs by oligo-capping method used in this DB

  • Full-length cDNA sequence data

    • a) FLJ full-length cDNA sequence data by FLJ-PJ : 30,063

    b) FLJ full-length cDNA sequence data by human cDNA sequencing project focused on splicing variants of mRNAs in NEDO FAP-PJ

    i) FLJ cDNA full ORF sequencing project I by SV-PJ : 12,530

    (ORF regions and 5'-noncoding regions)

    ii) FLJ cDNA full ORF sequencing project II by FAP-PJ : 3,446

    (ORF regions only)

    iii) FLJ cDNA full ORF sequencing project II by FAP-PJ : 603

    (not including 5'-noncoding region)

  • FLJ ESTs : 5'-EST 1,323,199 & 3'-EST 107,239

    • 2) Others human cDNA sequences from public DB in this DB

  • Full-length sequenced cDNAs

    • a) KIAA (Kazusa DNA Research Institute) : 2,459 (KIAA : 2039, FLJ-PJ : 420)

    b) MGC (Mammalian Gene Collection) : 23,988

    c) DKFZ (Deutsches Krebsforschungszentrum) : 8,212

    d) Other institutions : 14,991

  • RefSeq, human, ver. 2005.10.17

    • a) NM : 24,210

    b) NR : 251

    c) XM : 5,239

    d) XR : 61

  • Ensembl, human gene transcripts, human-34.35g/UCSC hg17: 33,581
  • UniGene, human ESTs*: 5'-EST 2,366,790 & 3'-EST 1,496,017

    • * including deposited FLJ EST sequences, 27,416 of 5'-ESTs and 15,733 of 3'-ESTs

    3) Human genome sequences

  • UCSC hg17 (NCBI Build 35)